We’ve upgraded to 3.2 from 3.1 and as i fear something stopped working.
I prepared some script to run our graphs from command line
3.2 vesion of file commonlib.bat seriously changed and one line made me mad for 2 hours together with MS shell behaviour 
if “%CLOVER_HOME%”==“” (set DERIVED_CLOVER_HOME=%DEFAULT_CLOVER_HOME%) else (set DERIVED_CLOVER_HOME=%CLOVER_HOME%)
such brackets with unquoted path under win64, where clover installs to Program files (x86) turns this expression into pumpkin
i found no time to change your script and simply replaced them with old ones
Also i have another question - how can i use commercial components in graphs running from coomand line not copying them into common (non-commercial) lib folder